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1

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

Brünger, Axel T.

Journal:

Year:

1992

File:

PDF, 433 KB

1992

2

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

Dr. Axel T. Brünger, Martin Karplus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1988

Language:

english

File:

PDF, 692 KB

english, 1988

3

A New Generation of Crystallographic Validation Tools for the Protein Data Bank

Randy J. Read, Paul D. Adams, W. Bryan Arendall III, Axel T. Brunger, Paul Emsley, Robbie P. Joosten, Gerard J. Kleywegt, Eugene B. Krissinel, Thomas Lütteke, Zbyszek Otwinowski, Anastassis Perrakis,

Journal:

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

4

Torsion-Angle Molecular Dynamics as a New Efficient Tool for NMR Structure Calculation

Evan G. Stein, Luke M. Rice, Axel T. Brünger

Journal:

Journal of Magnetic Resonance

Year:

1997

Language:

english

File:

PDF, 409 KB

english, 1997

5

Conformational variability in the refined structure of the chaperonin GroEL at 2.8 Å resolution

Braig, Kerstin, Adams, Paul D., Brünger, Axel T.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 1.70 MB

1995

6

Reintroducing Electrostatics into Macromolecular Crystallographic Refinement: Application to Neutron Crystallography and DNA Hydration

Timothy D. Fenn, Michael J. Schnieders, Marat Mustyakimov, Chuanjie Wu, Paul Langan, Vijay S. Pande, Axel T. Brunger

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

7

Conformational Variability of Solution Nucelar Magnetic Resonance Structures

Alexandre M.J.J. Bonvin, Axel T. Brünger

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 2.14 MB

english, 1995

8

Protein dynamics and distance determination by NOE measurements

David M. LeMaster, Lewis E. Kay, Axel T. Brünger, J.H. Prestegard

Journal:

Year:

1988

Language:

english

File:

PDF, 617 KB

english, 1988

9

Application of molecular dynamics with interproton distance restraints to three-dimensional protein structure determination: A model study of crambin

G.Marius Clore, Axel T. Brünger, Martin Karplus, Angela M. Gronenborn

Journal:

Journal of Molecular Biology

Year:

1986

Language:

english

File:

PDF, 2.39 MB

english, 1986

10

Advances, Interactions, and Future Developments in the CNS, Phenix, and Rosetta Structural Biology Software Systems

Adams, Paul D., Baker, David, Brunger, Axel T., Das, Rhiju, DiMaio, Frank, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C.

Journal:

Annual Review of Biophysics

Year:

2013

Language:

english

File:

PDF, 1.43 MB

english, 2013

11

Single-Molecule Studies of the Neuronal SNARE Fusion Machinery

Brunger, Axel T., Weninger, Keith, Bowen, Mark, Chu, Steven

Journal:

Annual Review of Biochemistry

Year:

2009

Language:

english

File:

PDF, 2.10 MB

english, 2009

12

New Insights into the Molecular Mechanism of Calcium-Triggered Synaptic Vesicle Fusion

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 33 KB

english, 2014

13

Molecular Dynamics Applied to X-ray Structure Refinement

Brunger, Axel T., Adams, Paul D.

Journal:

Accounts of Chemical Research

Year:

2002

Language:

english

File:

PDF, 243 KB

english, 2002

14

Molecular Mechanisms of Fast Neurotransmitter Release

Brunger, Axel T., Choi, Ucheor B., Lai, Ying, Leitz, Jeremy, Zhou, Qiangjun

Journal:

Annual Review of Biophysics

Year:

2018

Language:

english

File:

PDF, 3.17 MB

english, 2018

15

Native α-synuclein induces clustering of synaptic-vesicle mimics via binding to phospholipids and synaptobrevin-2/VAMP2

Diao, Jiajie, Burré, Jacqueline, Vivona, Sandro, Cipriano, Daniel J, Sharma, Manu, Kyoung, Minjoung, Südhof, Thomas C, Brunger, Axel T

Journal:

Year:

2013

Language:

english

File:

PDF, 3.34 MB

english, 2013

16

Synaptic vesicle fusion: today and beyond

Brose, Nils, Brunger, Axel, Cafiso, David, Chapman, Edwin R., Diao, Jiajie, Hughson, Frederick M., Jackson, Meyer B., Jahn, Reinhard, Lindau, Manfred, Ma, Cong, Rizo, Josep, Shin, Yeon-Kyun, Söllner,

Journal:

Nature Structural and Molecular Biology

Year:

2019

Language:

english

File:

PDF, 1.63 MB

english, 2019

17

Synaptic vesicle fusion: today and beyond

Brose, Nils, Brunger, Axel, Cafiso, David, Chapman, Edwin R., Diao, Jiajie, Hughson, Frederick M., Jackson, Meyer B., Jahn, Reinhard, Lindau, Manfred, Ma, Cong, Rizo, Josep, Shin, Yeon-Kyun, Söllner,

Journal:

Nature Structural and Molecular Biology

Year:

2019

File:

PDF, 1.63 MB

2019

18

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching

Adams, Paul D., Engelman, Donald M., Brünger, Axel T.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 610 KB

english, 1996

19

Are there dominant membrane protein families with a given number of helices?

Isaiah T. Arkin, Axel T. Brünger, Donald M. Engelman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 90 KB

english, 1997

20

Non-Boltzmann thermodynamic integration (NBTI) for macromolecular systems: Relative free energy of binding of trypsin to benzamidine and benzylamine

Nobuyuki Ota, Christopher Stroupe, J.M.S. Ferreira-da-Silva, Sapan A. Shah, Marcos Mares-Guia, Axel T. Brunger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 575 KB

english, 1999

21

Active site dynamics in protein molecules: A stochastic boundary molecular-dynamics approach

C. L. Brooks III, Axel Brünger, M. Karplus

Journal:

Year:

1985

Language:

english

File:

PDF, 1.07 MB

english, 1985

22

ChemInform Abstract: Molecular Dynamics Applied to X-Ray Structure Refinement

Axel T. Brunger, Paul D. Adams

Journal:

Year:

2002

File:

PDF, 25 KB

2002

23

Algorithmic Challenges in Computational Molecular Biophysics

Tamar Schlick, Robert D Skeel, Axel T Brunger, Laxmikant V Kalé, John A Board Jr., Jan Hermans, Klaus Schulten

Journal:

Journal of Computational Physics

Year:

1999

Language:

english

File:

PDF, 437 KB

english, 1999

24

Stochastic boundary conditions for molecular dynamics simulations of ST2 water

Axel Brünger, Charles L. Brooks III, Martin Karplus

Journal:

Chemical Physics Letters

Year:

1984

Language:

english

File:

PDF, 550 KB

english, 1984

25

Proline cis-trans isomerization in staphylococcal nuclease: Multi-substate free energy perturbation calculations

Alec Hodel, Luke M. Rice, Thomas Simonson, Robert O. Fox, Axel T. Brünger

Journal:

Protein Science

Year:

1995

Language:

english

File:

PDF, 10.04 MB

english, 1995

26

Exploration of disorder in protein structures by X-ray restrained molecular dynamics

Dr. John Kuriyan, Klara Ösapay, Stephen K. Burley, Axel T. Brünger, Wayne A. Hendrickson, Martin Karplus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1991

Language:

english

File:

PDF, 1.63 MB

english, 1991

27

Successful prediction of the coiled coil geometry of the GCN4 leucine zipper domain by simulated annealing: Comparison to the X-ray structure

Michael Nilges, Dr. Axel T. BrüNger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1993

Language:

english

File:

PDF, 1.55 MB

english, 1993

28

Torsion angle dynamics: Reduced variable conformational sampling enhances crystallographic structure refinement

Luke M. Rice, Axel T. BrüNger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1994

Language:

english

File:

PDF, 1.36 MB

english, 1994

29

Helix packing in proteins: Prediction and energetic analysis of dimeric, trimeric, and tetrameric GCN4 coiled coil structures

Warren L. Delano, Axel T. Brünger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1994

Language:

english

File:

PDF, 1.79 MB

english, 1994

30

Do NOE distances contain enough information to assess the relative populations of multi-conformer structures?

Alexandre M. J. J. Bonvin, Axel T. Brünger

Journal:

Journal of Biomolecular NMR

Year:

1996

Language:

english

File:

PDF, 415 KB

english, 1996

31

Sampling and efficiency of metric matrix distance geometry: A novel partial metrization algorithm

John Kuszewski, Michael Nilges, Axel T. Brünger

Journal:

Journal of Biomolecular NMR

Year:

1992

Language:

english

File:

PDF, 1.31 MB

english, 1992

32

Overcoming barriers in macromolecular simulations: non-Boltzmann thermodynamic integration

Nobuyuki Ota, Axel T. Brünger

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

1998

Language:

english

File:

PDF, 858 KB

english, 1998

33

Models for the Transmembrane Region of the Phospholamban Pentamer: Which Is Correct?

PAUL D. ADAMS, ALBERT S. LEE, AXEL T. BRÜNGER, DONALD M. ENGELMAN

Journal:

Annals of the New York Academy of Sciences

Year:

1998

File:

PDF, 3.10 MB

1998

34

Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP

Yu, Richard C., Hanson, Phyllis I., Jahn, Reinhard, Brünger, Axel T.

Journal:

Natural Structural Biology

Year:

1998

Language:

english

File:

PDF, 890 KB

english, 1998

35

Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP

Yu, Richard C., Hanson, Phyllis I., Jahn, Reinhard, Brünger, Axel T

Journal:

Natural Structural Biology

Year:

1998

Language:

english

File:

PDF, 114 KB

english, 1998

36

10.1038/26412

Brunger, Axel T., Sutton, R. Bryan, Fasshauer, Dirk, Jahn, Reinhard

Journal:

Year:

1998

Language:

english

File:

PDF, 865 KB

english, 1998

37

Storing diffraction data

Jones, T. Alwyn, Kleywegt, Gerard J., Brünger, Axel T.

Journal:

Year:

1996

File:

PDF, 713 KB

1996

38

10.1038/5803

Brunger, Axel T., Fiebig, Klaus M., Rice, Luke M., Pollock, Elizabeth

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 918 KB

english, 1999

39

Neuroligin-1 performs neurexin-dependent and neurexin-independent functions in synapse validation

Ko, Jaewon, Zhang, Chen, Arac, Demet, Boucard, Antony A, Brunger, Axel T, Südhof, Thomas C

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 2.58 MB

english, 2009

40

Substrate recognition strategy for botulinum neurotoxin serotype A

Breidenbach, Mark A., Brunger, Axel T.

Journal:

Year:

2004

Language:

english

File:

PDF, 379 KB

english, 2004

41

Botulinum neurotoxin B recognizes its protein receptor with high affinity and specificity

Jin, Rongsheng, Rummel, Andreas, Binz, Thomas, Brunger, Axel T.

Journal:

Year:

2006

Language:

english

File:

PDF, 772 KB

english, 2006

42

A ubiquitin ligase transfers preformed polyubiquitin chains from a conjugating enzyme to a substrate

Li, Wei, Tu, Daqi, Brunger, Axel T., Ye, Yihong

Journal:

Year:

2007

Language:

english

File:

PDF, 424 KB

english, 2007

43

Crystallography: Crystallographic evidence for deviating C3b structure

Janssen, Bert J. C., Read, Randy J., Brünger, Axel T., Gros, Piet

Journal:

Year:

2007

Language:

english

File:

PDF, 2.54 MB

english, 2007

44

Super-resolution biomolecular crystallography with low-resolution data

Schröder, Gunnar F., Levitt, Michael, Brunger, Axel T.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

45

Version 1.2 of the Crystallography and NMR system

Brunger, Axel T

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 631 KB

english, 2007

46

Amino-acid substitutions in a surface turn modulate protein stability

Predki, Paul F., Agrawal, Vishal, Brünger, Axel T., Regan, Lynne

Journal:

Natural Structural Biology

Year:

1996

File:

PDF, 620 KB

1996

47

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

Adams, Paul D., Arkin, Isaiah T., Engelman, Donald M., Brünger, Axel T.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 1.42 MB

1995

48

A dimerization motif for transmembrane α–helices

Adams, Paul D., Brünger, Axel T., Engelman, Donald M., Lemmon, Mark A., Treutlein, Herbert R.

Journal:

Natural Structural Biology

Year:

1994

File:

PDF, 1010 KB

1994

49

Crystal structure of the hCASK PDZ domain reveals the structural basis of class II PDZ domain target recognition

Daniels, Danette L., Cohen, Alexandra R., Anderson, James M., Brünger, Axel T.

Journal:

Natural Structural Biology

Year:

1998

File:

PDF, 1.80 MB

1998

50

Conformational changes of the multifunction p97 AAA ATPase during its ATPase cycle

Rouiller, Isabelle, DeLaBarre, Byron, May, Andrew P., Weis, William I., Brunger, Axel T., Milligan, Ronald A., Wilson-Kubalek, Elizabeth M.

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 944 KB

english, 2002